Metabolomics Tutorials
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| Why using metabolomics? |
SECIM (U Florida) |
Arthur Edison |
| Why using metabolomics? |
U Alabama |
Steven Barnes |
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Sample collection and preparation
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| Study design |
SECIM (U Florida) |
Lauren McIntyre |
| Experimental design and sample collection |
MRC2 (U Michigan) |
Anna Mathew |
| Study design and sample collection |
MRC2 (U Michigan) |
Chuck Burant |
| Methods of anaesthesia |
MRC2 (U Michigan) |
Charles Evans |
| Liquid cell culture sample collection |
MRC2 (U Michigan) |
(scripted) |
| Cell culture rinsing and quenching |
MRC2 (U Michigan) |
(scripted) |
| Plated cell culture extractions |
MRC2 (U Michigan) |
(scripted) |
| Mammalian tissue extractions |
MRC2 (U Michigan) |
(scripted) |
| Sample preparation |
MRC2 (U Michigan) |
Li Zhang |
| Sample preparation |
MRC2 (U Michigan) |
Kelli Sas |
| Sample preparation (incl body fluids) |
SECIM (U Florida) |
Alisha Roberts, T. Garrett |
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Data acquisition
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| Which platform to choose? |
U Alabama |
Steven Barnes |
| LC-MS and GC-MS |
SECIM (U Florida) |
Jean-Luc Wolfender |
| Isotope Outlier Ratio Analysis |
SECIM (U Florida) |
Chris Beecher |
| NMR |
SECIM (U Florida) |
Arthur Edison |
| Tissue imaging |
SECIM (U Florida) |
Rick Yost |
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Data processing
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| MS-DIAL introduction |
UC Davis |
Ivana Blazenovic |
| XCMS introduction |
Scripps @ U Alabama |
Xiuxia Du |
| MS-FINDER and SIRIUS for element formulas |
UC Davis |
Arpana Vaniya |
| Identification of unkowns with MS-FINDER |
UC Davis |
Arpana Vaniya |
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Statistics and data interpretation
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| Background in statistical methods |
U Edmonton (Alberta) |
Jeff Xia |
| Tools and databases |
MRC2 (U Michigan) |
Alla Karnovsky |
| Multiple hypothesis testing |
MRC2 (U Michigan) |
George Michailidis |
| Data integration |
MRC2 (U Michigan) |
George Michailidis |
| Enrichment analysis |
MRC2 (U Michigan) |
Alla Karnovsky |
| Using Galaxy for data visualization |
SECIM (U Florida) |
Sergio Tafur |
| Using MetaboAnalyst for pathways |
U Alabama |
Steven Barnes |
| MetaboAnalyst |
U Edmonton (Alberta) |
David Wishart |
| Using ChemRich as alternative to MetaboAnalyst |
UC Davis |
Dinesh Barupal |